See my Google Scholar Profile and my Github page
49) Andrews KR, DD New, DS Gour, K Francetich, SA Minnich, BD Robison, CJ Hovde. 2023. Genomic surveillance identifies potential risk factors for SARS-CoV-2 transmission at a mid-sized university in a small rural town. Scientific Reports 13:7902. DOI: 10.1038/s41598-023-34625-7
48) Hendricks SA, CA Vella, DD New, A Aunjum, M Antush, R Geidl, KR Andrews, OB Balemba. 2023. High-resolution taxonomic characterization reveals novel human microbial strains with potential as risk factors and probiotics for prediabetes and type 2 diabetes. Microorganisms 11(3):758. DOI: 10.3390/microorganisms11030758
47) Andrews KR, T Seaborn, JP Egan, MW Fagnan, DD New, Z Chen, PA Hohenlohe, LP Waits, CC Caudill, SR Narum. 2023. Whole genome resequencing identifies local adaptation associated with environmental variation for redband trout. Molecular Ecology 32:800-818. DOI: 10.1111/mec.16810
46) Barbosa S, KR Andrews, AR Goldberg, DS Gour, PA Hohenlohe, CJ Conway, LP Waits. 2021. The role of neutral and adaptive genomic variation in population diversification and speciation in two ground squirrel species of conservation concern. Molecular Ecology 30(19): 4673-4694. DOI: 10.1111/mec.16096
45) Barbosa S, KR Andrews, RB Harris, DS Gour, JR Adams, EF Cassirer, HM Miyasaki, HM Schwantje, LP Waits. 2021. Genetic diversity and divergence among bighorn sheep from reintroduced herds in Washington and Idaho. Journal of Wildlife Management 85:1214-1231. DOI: 10.1002/jwmg.22065
44) Andrews KR, I Fernandez-Silva, JE Randall, HC Ho. 2021. Etelis boweni sp. nov., a new cryptic deepwater eteline snapper from the Indo-Pacific (Perciformes: Lutjanidae). Journal of Fish Biology. 99(2): 335-344 DOI: 10.1111/jfb.14720
43) Andrews KR, SS Hunter, BK Torrevillas, N Cespedes, SM Garrison, J Strickland, D Wagers, G Hansten, DD New, MW Fagnan, S Luckhart. 2021. A new mouse SNP genotyping assay for speed congenics: combining flexibility, affordability, and power. BMC Genomics 22(378). DOI: 10.1186/s12864-021-07698-9
42) Kershaw F, W McClintock, KR Andrews, FG Riet-Sapriza, S Caballero, MJ Tetley, GN di Sciara, E Hoyt, G Goldberg, E Chou, K Kane-Ritsch, HC Rosenbaum. 2021. Geospatial genetics: Integrating genetics into marine protection and spatial planning. Aquatic Conservation-Marine and Freshwater Ecosystems. DOI: 10.1002/aqc.3622
41) Seaborn T, KR Andrews, CV Applestein, TM Breech, MJ Garrett, A Zaiats, TT Caughlin. 2021. Integrating genomics in population models to forecast translocation success. Restoration Ecology 29(4). DOI: 10.1111/rec.13395
40) Andrews KR, B Epstein, MS Leslie, P Fiedler, PA Morin, AR Hoelzel. 2021. Genomic signatures of divergent selection are associated with social behavior for spinner dolphin ecotypes. Molecular Ecology 30(9): 1993-2008. DOI: doi.org/10.1111/mec.15865
39) Martin AM, EF Cassirer, LP Waits, RK Plowright, PC Cross, KR Andrews. 2021. Genomic association with pathogen carriage in bighorn sheep (Ovis canadensis). Ecology and Evolution 11(6): 2488-2502. DOI: 10.1002/ece3.7159
38) Riginos C, ED Crandall, L Liggins, MR Gaither, RB Ewing, C Meyer, KR Andrews, PT Euclide, BM Titus, NO Therkildsen, A Salces-Castellano, LC Stewart, RJ Toonen, J Deck. 2020. Building a global genomics observatory: Using GEOME (the Genomic Observatories Metadatabase) to expedite and improve deposition and retrieval of genetic data and metadata for biodiversity research. Molecular Ecology Resources 20: 1458-1469. DOI: 10.1111/1755-0998.13269
37) Andrews KR, JM Copus, C Wilcox, AJ Williams, SJ Newman, CB Wakefield, BW Bowen. 2020. Range-wide population structure of 3 deepwater Eteline snappers across the Indo-Pacific Basin. Journal of Heredity 111: 471–485. DOI: 10.1093/jhered/esaa029
36) Andrews KR, A Gerritsen, A Rashed, DW Crowder, SI Rondon, WG van Herk, R Vernon, KW Wanner, CM Wilson, DD New, MW Fagnan, PA Hohenlohe, SS Hunter. 2020. Wireworm (Coleoptera: Elateridae) genomic analysis reveals putative cryptic species, population structure, and adaptation to pest control. Communications Biology 3. DOI: 10.1038/s42003-020-01169-9
35) Maselko J, KR Andrews, PA Hohenlohe. 2020. Long-lived marine species may be resilient to environmental variability through a temporal portfolio effect. Ecology and Evolution 10: 6435-6448. DOI: 10.1002/ece3.6378
34) Goldberg AR, CJ Conway, DC Tank, KR Andrews, DS Gour, LP Waits. 2020. Diet of a rare herbivore based on DNA metabarcoding of feces: Selection, seasonality, and survival. Ecology and Evolution 10: 7627-7643. DOI: 10.1002/ece3.6488
33) AE Moura, K Shreves, M Pilot, KR Andrews, DM Moore, T Kishida, L Möller, A Natoli, S Gaspari, M McGowen, H Gray, M Gore, RM Culloch, MS Kiani, MS Willson, A Bulushi, T Collins, R Baldwin, A Willson, G Minton, L Ponnampalam, AR Hoelzel. 2020. Phylogenomics of the genus Tursiops and closely related Delphininae reveals extensive reticulation among lineages and provides inference about eco-evolutionary drivers. Molecular Phylogenetics and Evolution. DOI: 10.1016/j.ympev.2020.106756.
32) Randall JE, KR Andrews, I Fernandez-Silva. 2019. The Indo-Pacific Red Snapper Etelis carbunculus Cuvier (in Cuvier & Valenciennes 1828) proposed as a swarm. Aqua, International Journal of Ichthyology. 25(4):179-184.
31) Crandall ED, C Riginos, CE Bird, L Liggins, E Treml, M Beger, PH Barber, SR Connolly, PF Cowman, JD DiBattista, JA Eble, SF Magnuson, JB Horne, M Kochzius, HA Lessios, SYV Liu, WB Ludt, H Madduppa, JM Pandolfi, RJ Toonen, Contributing Members of the Diversity of the Indo-Pacific Network, MR Gaither. 2019. The molecular biogeography of the Indo-Pacific: Testing hypotheses with multispecies genetic patterns. Global Ecology and Biogeography. DOI: 10.1111/geb.12905
30) Andrews KR, M De Barba, MA Russello, LP Waits. 2018. Advances in using non-invasive, archival, and environmental samples in population genomic studies. In: PA Hohenlohe, OP Rajora (ed.) Population Genomics: Wildlife, Springer Nature. DOI: 10.1007/13836_2018_45.
29) Andrews KR, JR Adams, EF Cassirer, RK Plowright, C Gardner, M Dwire, PA Hohenlohe, LP Waits. 2018. A bioinformatic pipeline for identifying informative SNP panels for parentage assignment from RADseq data. Molecular Ecology Resources. 18:1263-1281. DOI:10.1111/1755-0998.12910.
28) Hohenlohe PA, BK Hand, KR Andrews, G Luikart. 2018. Population genomic insights in ecology and evolution. In: OP Rajora (ed.) Population Genomics Concepts and Approaches, Springer Nature. DOI: 10.1007/13836_2018_20.
27) Plowright RK, K Manlove, TE Besser, DJ Paez, KR Andrews, PE Matthews, L Waits, PJ Hudson, EF Cassirer. 2017. Age-specific infectious period shapes dynamics of pneumonia in bighorn sheep. Ecology Letters. 20(10):1325-1336. DOI: 10.1111/ele.12829.
26) Catchen J, PA Hohenlohe, L Bernatchez, WC Funk, KR Andrews, F Allendorf. 2017. Unbroken: RADseq remains a powerful tool for understanding the genetics of adaptation in natural populations. Molecular Ecology Resources. 17(3):362-5.
25) Hohenlohe PA, LY Rutledge, LP Waits, KR Andrews, JR Adams, JW Hinton, RM Nowak, BR Patterson, AP Wydeven, PA Wilson, BN White. 2017. Whole-genome data do not support recent hybrid origins of red wolves and eastern wolves. Science Advances. 9(6):e1602250, DOI:10.1126/sciadv.1602250
24) Bowen BW, MR Gaither, JD DiBattista, M Iacchei, KR Andrews, WS Grant, RJ Toonen, JC Briggs. 2017. Comparative Phylogeography of the Ocean Planet. Pp. 5-21 In: Avise JC, Bowen BW, Ayala FJ. (eds) In the light of evolution, Volume X: Comparative phylogeography, National Academies Press, Washington D.C.
23) Cammen KM, KR Andrews, EL Carroll, AD Foote, E Humble, JI Khudyakov, M Louis, MR McGowen, MT Olsen, AM VanCise. 2016. Genomic methods take the plunge: recent advances in high-throughput sequencing of marine mammals. Journal of Heredity 107(6):481-95, doi:10.1093/jhered/esw044 (Invited Review)
22) Bowen BW, MR Gaither, JD DiBattista, M Iacchei, KR Andrews, WS Grant, RJ Toonen, JC Briggs. 2016. Comparative Phylogeography of the Ocean Planet. Proceedings of the National Academy of Sciences 113(29):7962–9, doi: 10.1073/pnas.1602404113
21) Andrews KR, AJ Williams, I Fernandez-Silva, SJ Newman, JM Copus, CB Wakefield, JE Randall, BW Bowen. 2016. Phylogeny of deepwater snappers (Genus Etelis) reveals a cryptic species pair in the Indo-Pacific and Pleistocene invasion of the Atlantic. Molecular Phylogenetics and Evolution
100:361-371
20) Selkoe K, O Gaggiotti, E Treml, J Wren, M Donovan, Hawaii Reef Connectivity Consortium, R Toonen. 2016. The DNA of coral reef biodiversity – predicting and protecting genetic diversity of reef assemblages. Proceedings of the Royal Society B (283):20160354
19) Andrews KR, JM Good, MR Miller, G Luikart, PA Hohenlohe. 2016. Harnessing the power of RADseq for ecological and evolutionary genomics. Nature Reviews Genetics 17(81-92)
18) Goetze E, KR Andrews, KTCA Peijnenburg, E Portner, E Norton. 2015. Temporal stability of genetic structure in a mesopelagic copepod. PLoS ONE 10(8):e0136087.doi:10.1371/journal.pone.0136087
17) Andrews KR, PA Hohenlohe, MR Miller, B Hand, JE Seeb, G Luikart. 2014. Trade-offs and utility of alternative RADseq methods: Reply to Puritz et al. 2014. Molecular Ecology 23:5943-5946.
16) Andrews KR, E Norton, I Fernandez-Silva, E Portner, E Goetze. 2014. Multilocus evidence for globally-distributed cryptic species and distinct populations across ocean gyres in a mesopelagic copepod. Molecular Ecology 23(22):5462-79.
15) Andrews KR, G Luikart. 2014. Recent novel approaches for population genomics data analysis. Molecular Ecology 23:1661-1667.
14) Andrews KR, V Moriwake, C Wilcox, EG Grau, C Kelley, RL Pyle, BW Bowen. 2014. Phylogeographic analyses of submesophotic snappers Etelis coruscans and Etelis “marshi” (Family Lutjanidae) reveal concordant genetic structure across the Hawaiian Archipelago. PLoS ONE 9(4)e91665
13) Selkoe AS, OE Gaggiotti, KR Andrews, MA Bernal, C Bird, H Bolick, I Baums, R Coleman, GT Concepcion, MT Craig, JD DiBattista, J Eble, I Fernandez-Silva, MR Gaither, M Iacchei, NR Polato, MAJ Rivera LA Rocha, D Skillings, M Timmers, Z Szabo, BW Bowen, RJ Toonen. 2014. Emergent patterns of population genetic structure for a coral reef community. Molecular Ecology 23:3064-3079.
12) Andrews KR, WF Perrin, M Oremusk, L Karczmarski, BW Bowen, JB Puritz, RJ Toonen. 2013. The evolving male: spinner dolphin (Stenella longirostris) ecotypes are divergent at Y chromosome but not mtDNA or autosomal markers. Molecular Ecology 22(9):2408-23.
11) Andrews K. 2013. Population Genetics in the Conservation of Primates and Cetaceans. In: L. Karczmarski & J. Yamagiwa (eds.) Primates and Cetaceans: Field Studies and Conservation of Complex Mammalian Societies, pp 289-308, Springer Japan.
10) Toonen RJ, JB Puritz, ZH Forsman, JL Whitney, I Fernandez-Silva, KR Andrews, CE Bird. 2013. ezRAD: A simplified method for genomic genotyping in non-model organisms. PeerJ. 1:e203; DOI 10.7717/peerj.203
9) Fernandez-Silva I, J Whitney, B Wainwright, KR Andrews, H Ylitalo-Ward, BW Bowen, RJ Toonen, E Goetze, SA Karl. 2013. Microsatellites for next-generation ecologists: a post-sequencing bioinformatics pipeline. PLoS ONE 8(2): e55990.doi:10.1371/journal.pone.0055990
8) Toonen RJ, KR Andrews, IB Baums, CE Bird, GT Concepcion, TS Daly-Engel, JA Eble, A Faucci, MR Gaither, M Iacchei, JB Puritz, JK Schultz, DJ Skillings, M Timmers, BW Bowen. 2011. Defining boundaries for ecosystem-based management: A multispecies case study of marine connectivity across the Hawaiian Archipelago. Journal of Marine Biology 2011, Article ID 460173
7) MAJ Rivera*, Andrews KR*, D Kobayashi, J Wren, C Kelley, GK Roderick, RJ Toonen. 2011. Genetic analyses and simulations of larval dispersal reveal distinct populations and directional connectivity across the range of the Hawaiian Grouper (Epinephelus quernus). Journal of Marine Biology 2011: Article ID 765353. *Equal contribution
6) Timmers MA, RJ Toonen, KR Andrews, C Bird, MJ deMaintenon, RE Brainard. 2011. Widespread dispersal of the crown-of-thorns sea star, Acanthaster planci, across the Hawaiian Archipelago and Johnston Atoll. Journal of Marine Biology 2011: Article ID 934269.
5) Andrews KR, L Karczmarski, WWL Au, SH Rickards, CA Vanderlip, BW Bowen, E Gordon Grau, RJ Toonen. 2010. Rolling stones and stable homes: Social structure, habitat diversity, and population genetics of the Hawaiian spinner dolphin (Stenella longirostris). Molecular Ecology 19:732-748.
4) Johnston DW, J Robbins, ME Chapla, D K Mattila, KR Andrews. 2008. Diversity, habitat associations and stock structure of odontocete cetaceans in the waters of American Samoa, 2003-06. Journal of Cetacean Research and Management 10:59-66.
3) Andrews KR, L Karczmarski, WWL Au, SH Rickards, CA Vanderlip, RJ Toonen. 2006. Patterns of genetic diversity of the Hawaiian spinner dolphin (Stenella longirostris). Atoll Research Bulletin No. 543:65-73.
2) Au WWL, AA Pack, MO Lammers, LM Herman, MH Deakos, K Andrews. 2006. Acoustic properties of humpback whale songs. Journal of the Acoustical Society of America 120:1103-1110.
1) Nachtigall PE, WWL Au, JL Pawloski, K Andrews, and CW Oliver. 2000. Measurements of the low frequency components of active and passive sounds produced by dolphins. Aquatic Mammals 26:167-174.